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Research Projects

Environmental Conservation

There is widespread interest in greening municipalities and increasing urban tree canopy cover, largely through local community-based tree planting initiatives. It is generally estimated that newly-installed (i.e. planted) trees require at least 3 or more years before establishment, when they resume pre-transplant growth rates. Most trees installed in the urban environment are dug from the nursery field with a spade, and wrapped in burlap and a metal basket ('balled and burlap' or 'B&B'). There is interest, however, by shade tree committee members and professional urban foresters alike, in planting trees grown using other easier-to-plant systems, including a variety of container-grown (CG, IGF) and bare-root (BR) tree production methods. Trees grown from these production systems, however, must have the potential to grow long-term and reach maturity to offer the numerous values associated with urban trees that include a variety of aesthetic, social, and environmental benefits.This may be a challenge, since urban environments often present very difficult growing conditions that habitually thwart tree growth and survival. Though advances in understanding have been made, empirical data to describe the survival and growth of such trees remains limited, with the preponderance of research considering trees growing in agricultural plots, rather than in urban settings. Since budget constraints are routinely identified as a key limiting factor relative to urban forest management practices, there is also a need for further information concerning the longer term costs associated with planting and maintaining urban trees. Collecting growth and maintenance cost data on established urban oak specimens in Amherst, MA, produced using various nursery systems will 1) add to the overall base of  knowledge concerning urban tree growth and survival 2) enable the quantification and further understanding of the relationship of urban tree growth/survival and nursery production system 3) Enable the quantification and further understanding of the long-term costs associated with planting and maintaining urban trees. The long-term goal of this work is to gather local, empirical data that will help urban forest practitioners consider the appropriate (i.e. most cost-effective, best-performing) nursery production system, when selecting trees for urban planting in Massachusetts communities.


Department of Project: Department of Microbiology

Nearly all food and agricultural waste in the U.S. enters landfills, making it the largest contributor of material entering these sites. Biological pre-treatment of large organic molecules by fermentative organisms lowers the high organic carbon load in waste, lowers wastewater treatment costs, and can produce bioenergy to partially offset costs. Conceivably, microbes that grow best above 80°C, or so-called ‘hyperthermophiles’, could be used to consolidate wastewater heat treatment and organic remediation in a single step to decrease costs while producing H2 as an energy product.

The expansive growth of solar photovoltaics (PV) in Massachusetts has helped make the state a leader in renewable energy production, but there have been public concerns regarding the development of agricultural lands for solar PV electricity production. In response to these concerns, the Massachusetts Department of Energy Resources (DOER) included provisions in the new state solar energy program which limit conventional ground-mounted solar arrays on farmland, while encouraging innovative "dual-use" technology. Under the new Solar Massachusetts Renewable Target (SMART) program, there is a significant financial incentive for dual-use systems which limit shading and obstructions, and require continued agricultural production on the land below and around solar arrays.

Department of Project: Department of Biology

Increased use of biomass fuels is a promising renewable option to reduce greenhouse gases and decrease our dependence on foreign oil. A joint study by the DOE and USDA determined that there is an annual supply of greater than one billion tons of nongrain biomass available from forestry and agricultural resources to support a renewable biofuels industry, more than enough to meet the US government's target of displacing 30% of current US petroleum consumption by 2030 (Somerville 2006). Realizing renewable biofuels depends on technologies that are able to release the energy stored in cellulose fibers at a reasonable cost. Unfortunately, to date there has not been sufficient progress towards a broad, economically viable solution to the plant biomass recalcitrance problem.
One area ripe for development is breeding of improved biofuel feedstocks that will optimize current conversion methods. Breeding of improved energy crops hinges on identifying the genetic mechanisms underlying traits that benefit energy production. Determining the key genetic contributors  influencing biofuel traits is required in order to determine the viability of these traits as targets for improvement; only then will we be able to apply modern breeding practices, such as marker-assisted selection, for the rapid improvement of feedstocks. The exploitation of natural variation in plant species is an ideal approach to identify both the traits and the genes of interest in the production of biofuels.


Department of Project: Stockbridge School of Agriculture

Plant seed oils have tremendous potential as environmentally, economically and technologically feasible replacements for petroleum, but the relatively low oil yields from existing crops limits the commercial viability of seed oil based biofuels.

Therefore, a primary issue of concern with biofuels and bio-products is the ability to produce enough  feedstock oils without displacing food crops. A second major concern is that environmental stresses such as drought, salinity, heat, and exposure to toxic metals adversely affect the growth and productivity of crop plants and thus are serious threats to crop production for food as well as biofuels. Additionally, increase oil contents and composition of fatty acids in edible oil not only improve the food security but will also improve the health of millions of people globally. Our proposed study addresses these fundamental concerns with research to enable the growth of high yield biofuel crops on contaminated and marginal lands without displacing food crop production. Molecular and biochemical approaches are proposed for improving the tolerance of plants to multiple abiotic and oxidative stresses, which will enable biofuel crops to grow on marginal and nutrient poor lands.

During this project, we will identify the key bottlenecks and rate limiting steps in the pathways for Triacylglycerol biosynthesis and storage in seeds. Further we will engineer Camelina sativa, brassica juncea and other related oilseeds crops for higher oil and seeds yields using the candidate genes. Additionally, we will develop "climate-resilient oil seeds crops" by combining enhanced oil and seed yield traits with traits imparting abiotic stresses tolerance in oil seed crops for enabling these crops to grow on nutrient poor marginal lands under changing climate.

We expect to be able to identify key genes/gene networks that limits the accumulation of lipids in seeds using transcriptomic, genomics and metabolomic approaches and  expect to produce genetically engineered oil seed crops with increased oil and seed yield.

Department of Project: Department of Microbiology

Although considerable research has been performed focused on the conversion of biomass to useful products, to date we still have no functional bio-refineries in the US or globally. One of the key problems in the conversion of biomass is known as the "lignin recalcitrance barrier". Lignin is a tough "plastic material" produced by plants that, at the molecular level, coats the "cellulosic" components of biomass that are used to produce most bio-based products and biofuels. Currently some very harsh chemical and heat pre-treatment systems that release cellulosic components from the surrounding lignin barrier are used in pilot scale research for most bio-refineries. To date however, these have been shown to be so harsh that they either damage the cellulose components, they are so polluting that they generate problematic or hazardous wastes, or they simply are so expensive that they cannot be used practically. What our research focuses on is harnessing and utilizing the CMF system that was developed millions of years ago by fungal organisms (a system that has largely been ignored by most scientists interested in biomass conversion). We hope that by harnessing the system that these unique "brown rot" fungi have evolved over the millennia that we can mimic and apply their chemistries to produce biorefinery systems that are more effective, and in particular that are highly energy efficient, cost efficient, safe and non-polluting.

Department of Project: Department of Resource Economics

Residential solar power is an important technological innovation that holds promise for a cleaner energy future. Out of 2.5 million households in the state of Massachusetts, those who installed solar photovoltaic(PV) systems grew from a mere 14 households to 60,465 households between 2010-2017. Between 2015-2017, the residential installations are growing at an even higher rate
of 50% (Data source: Massachusetts Department of Energy Resources). It is crucial to understand what factors are determining the household decisions in the process of adopting the solar PV system.


Department of Project: Department of Geosciences

Global climate change is altering the Earth's natural cycling of water from the ground to the air and back again, what is known as the hydrologic cycle. In New England, climate change is predicted to increase temperatures and increase the frequency and strength of rain events. The increased temperatures will result in less snow accumulation in the winter and an increased need for irrigation in the hotter summer as evapo-transpiration increases. This will alter significantly the recharge/extraction cycle. Will less water enter groundwater aquifers because of reduced snow fall? Will enough water recharge the aquifers to offset the amount extracted in the summer for irrigation? Certainly the timing of recharge will change. These changes will require a better understanding of recharge rates and a better characterization of groundwater aquifers; the volume of water present and its availability. Understanding the seasonal timing and rates of groundwater recharge is critical to maintaining a sustainable water supply. Importantly, how will these changes in the hydrolgical cycle effect sustainable agricultural practices?

This study will provide important information on long-term trends in water demand and supply, aid in the formulation of water policies for water resource development, and offer information to help protect surface and groundwater supplies. This project will also target areas with the best potential for surface augmentation of water supplies based on the relative benefits and costs of water supply augmentation (through spatially explicit policies for runoff mitigation and groundwater recharge). This project will evaluate water resources within a watershed ecosystem framework, and thereby will consider multiple supplies and uses of water resources. This study will address three areas of special interest to the region, namely:
• Water management in the context of forest loss and rapid development and conflict for water supply;
• Improvements in the assessment of water availability, incorporating technological, institutional, cultural and economic factors that   influence water use and water availability and;
• Improved methods of characterizing and quantifying components of the water cycle in forested watersheds.

Department of Project: Stockbridge School of Agriculture

Improving water management is of increasing importance in horticultural operations. A growing global population and changes in water availability will mean that less water will be available for ornamental plant production. There are also a growing number of federal and state regulations regarding water use and runoff from production areas. Better irrigation and fertilization management practices will help to limit the environmental impact of container plant production by limiting the runoff of water and nutrients from nurseries. It will help growers to meet regulations regarding nutrient management and runoff. Reductions in runoff will help improve quality in local ecosystems.

Food Science

Department of Project: Department of Food Science

 Nanotechnology is defined by the National Nanotechnology Initiative (NNI) as “…the understanding and control of matter at dimensions between approximately 1 and 100 nanometers, where unique phenomena enable applications. Here in this proposal, we aim to develop four nanotechnology enabled solutions to improve food quality, safety and nutrition.  A major trend in the modern food industry has been the development of functional foods designed to improve human health and wellbeing. Consumption of these foods may reduce the incidences of chronic diseases (such as cardiovascular disease, eye disease, diabetes, cancer, and hypertension) or improve human performance (such as alertness, activity levels, memory, and stamina).

Department of Project: Stockbridge School of Agriculture

House flies are the major vector of numerous food pathogens (e.g., Escherichia coli). It has been suggested that the fly crop is the major reservoir for the pathogen and also that this is where horizontal transmission of antibiotic resistance occurs. The salivary glands of most flies involved in vectoring pathogens are also involved in pathogen transmission and their nutrient and pathogen uptake while feeding. This research focuses on two essential organ systems of house flies, in order to explore non-traditional control strategies for the insects. Control of flies is thought to have a potential strong impact on transmission of food pathogens.

Department of Project: Department of Food Science

There is a strong association of chronic inflammation with various types of diseases.

However, many of the current treatments for chronic inflammation are limited due to undesirable side effects associated with their long-term use and research has shown bioactive dietary components to be promising candidates for the prevention of inflammation and associated diseases. Thus, the goal of this project is to investigate the role of food bioactives in conjunction with microbiomes in prevention of inflammatory responses.

Department of Project: Department of Food Science

Food safety is very much an agricultural issue.
This multi-researcher project will focus on four critical aspects of food safety: understanding the scope of food safety problems, characterizing the scientific basis of pathogenic organisms' survival, development of methodology for detection, and translating knowledge through food safety extension research and activates. Together these activities will contribute to the long term goal of reducing the overall risk of foodborne illness.

Department of Project: Department of Food Science

Dietary factors are important predictors of long term health and the incidence of chronic disease. Laboratory methods will be employed, primarily in vitro models, such as in vitro digestion and tissue cultures, which will be used to evaluate the bioactivity of nutrients and other food bioactives to understand the mechanisms. The investigator will seek to advance the science of defining the role of bioactive dietary constituents for optimal human health. This will provide fertile grounds for ongoing collaborations and future collaborative research and grant proposal development.